Description of Komagataella mondaviorum sp. nov., a new sibling species of Komagataella (Pichia) pastoris.
Identifieur interne : 000F64 ( Main/Exploration ); précédent : 000F63; suivant : 000F65Description of Komagataella mondaviorum sp. nov., a new sibling species of Komagataella (Pichia) pastoris.
Auteurs : Gennadi I. Naumov [Russie] ; Elena S. Naumova [Russie] ; Kyria L. Boundy-Mills [États-Unis]Source :
- Antonie van Leeuwenhoek [ 1572-9699 ] ; 2018.
Descripteurs français
- KwdFr :
- Facteur-1 d'élongation de la chaîne peptidique (génétique), Maladies des plantes (microbiologie), Phylogenèse (MeSH), Pichia (classification), Pichia (génétique), Pichia (isolement et purification), Populus (microbiologie), Protéines fongiques (génétique), Quercus (microbiologie), Saccharomycetales (classification), Saccharomycetales (génétique), Saccharomycetales (isolement et purification).
- MESH :
- génétique : Facteur-1 d'élongation de la chaîne peptidique, Pichia, Protéines fongiques, Saccharomycetales.
- isolement et purification : Pichia, Saccharomycetales.
- microbiologie : Maladies des plantes, Populus, Quercus.
- Phylogenèse.
English descriptors
- KwdEn :
- Fungal Proteins (genetics), Peptide Elongation Factor 1 (genetics), Phylogeny (MeSH), Pichia (classification), Pichia (genetics), Pichia (isolation & purification), Plant Diseases (microbiology), Populus (microbiology), Quercus (microbiology), Saccharomycetales (classification), Saccharomycetales (genetics), Saccharomycetales (isolation & purification).
- MESH :
- chemical , genetics : Fungal Proteins, Peptide Elongation Factor 1.
- classification : Pichia, Saccharomycetales.
- genetics : Pichia, Saccharomycetales.
- isolation & purification : Pichia, Saccharomycetales.
- microbiology : Plant Diseases, Populus, Quercus.
- Phylogeny.
Abstract
Five methylotrophic strains (UCDFST 71-1024T, UCDFST 54-11.16, UCDFST 54-11.141, UCDFST 68-967.1 and UCDFST 74-1030) from the Phaff Yeast Culture Collection (University of California Davis, USA) that were originally designated as Pichia pastoris were found to represent a novel Komagataella species. Strains of Komagataella mondaviorum sp. nov. UCDFST 71-1024T(type strain) = CBS 15017, UCDFST 54-11.16, UCDFST 54-11.141, UCDFST 68-967.1, and UCDFST 74-1030 were isolated in USA, respectively, from cottonwood tree Populus deltoides in 1971 (Davis, CA), slime flux of Quercus sp. in 1954 (CA), exudate of black oak Q. kelloggii in 1954 (Central Sierra Nevada. CA), dry frass from Salix sp. in 1968 (Soleduck Road, Olympic National Park, WA) and from flux of hackberry tree Celtis sp. in 1974 (CA). The new species was differentiated from Komagataella kurtzmanii, Komagataella pastoris, Komagataella phaffii, Komagataella populi, Komagataella pseudopastoris and Komagataella ulmi by divergence in gene sequences for D1/D2 LSU rRNA, ITS1-5.8S-ITS2, RNA polymerase subunit I and translation elongation factor-1α. Komagataella mondaviorum sp. nov. is registered in MycoBank under MB 821789.
DOI: 10.1007/s10482-018-1028-6
PubMed: 29388077
Affiliations:
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Naumov</name><affiliation wicri:level="1"><nlm:affiliation>State Research Institute of Genetics and Selection of Industrial Microorganisms of National Research Centre "Kurchatov Institute", Moscow, 117545, Russia. gnaumov@yahoo.com.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>State Research Institute of Genetics and Selection of Industrial Microorganisms of National Research Centre "Kurchatov Institute", Moscow, 117545</wicri:regionArea><wicri:noRegion>117545</wicri:noRegion></affiliation></author><author><name sortKey="Naumova, Elena S" sort="Naumova, Elena S" uniqKey="Naumova E" first="Elena S" last="Naumova">Elena S. Naumova</name><affiliation wicri:level="1"><nlm:affiliation>State Research Institute of Genetics and Selection of Industrial Microorganisms of National Research Centre "Kurchatov Institute", Moscow, 117545, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>State Research Institute of Genetics and Selection of Industrial Microorganisms of National Research Centre "Kurchatov Institute", Moscow, 117545</wicri:regionArea><wicri:noRegion>117545</wicri:noRegion></affiliation></author><author><name sortKey="Boundy Mills, Kyria L" sort="Boundy Mills, Kyria L" uniqKey="Boundy Mills K" first="Kyria L" last="Boundy-Mills">Kyria L. Boundy-Mills</name><affiliation wicri:level="2"><nlm:affiliation>Phaff Yeast Culture Collection, Department of Food Science and Technology, University of California, Davis, 95616, CA, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Phaff Yeast Culture Collection, Department of Food Science and Technology, University of California, Davis, 95616, CA</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">Antonie van Leeuwenhoek</title><idno type="eISSN">1572-9699</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Fungal Proteins (genetics)</term><term>Peptide Elongation Factor 1 (genetics)</term><term>Phylogeny (MeSH)</term><term>Pichia (classification)</term><term>Pichia (genetics)</term><term>Pichia (isolation & purification)</term><term>Plant Diseases (microbiology)</term><term>Populus (microbiology)</term><term>Quercus (microbiology)</term><term>Saccharomycetales (classification)</term><term>Saccharomycetales (genetics)</term><term>Saccharomycetales (isolation & purification)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Facteur-1 d'élongation de la chaîne peptidique (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Phylogenèse (MeSH)</term><term>Pichia (classification)</term><term>Pichia (génétique)</term><term>Pichia (isolement et purification)</term><term>Populus (microbiologie)</term><term>Protéines fongiques (génétique)</term><term>Quercus (microbiologie)</term><term>Saccharomycetales (classification)</term><term>Saccharomycetales (génétique)</term><term>Saccharomycetales (isolement et purification)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Fungal Proteins</term><term>Peptide Elongation Factor 1</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Pichia</term><term>Saccharomycetales</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Pichia</term><term>Saccharomycetales</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Facteur-1 d'élongation de la chaîne peptidique</term><term>Pichia</term><term>Protéines fongiques</term><term>Saccharomycetales</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Pichia</term><term>Saccharomycetales</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Pichia</term><term>Saccharomycetales</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Populus</term><term>Quercus</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Populus</term><term>Quercus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Phylogenèse</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Five methylotrophic strains (UCDFST 71-1024<sup>T</sup>, UCDFST 54-11.16, UCDFST 54-11.141, UCDFST 68-967.1 and UCDFST 74-1030) from the Phaff Yeast Culture Collection (University of California Davis, USA) that were originally designated as Pichia pastoris were found to represent a novel Komagataella species. Strains of Komagataella mondaviorum sp. nov. UCDFST 71-1024<sup>T</sup>(type strain) = CBS 15017, UCDFST 54-11.16, UCDFST 54-11.141, UCDFST 68-967.1, and UCDFST 74-1030 were isolated in USA, respectively, from cottonwood tree Populus deltoides in 1971 (Davis, CA), slime flux of Quercus sp. in 1954 (CA), exudate of black oak Q. kelloggii in 1954 (Central Sierra Nevada. CA), dry frass from Salix sp. in 1968 (Soleduck Road, Olympic National Park, WA) and from flux of hackberry tree Celtis sp. in 1974 (CA). The new species was differentiated from Komagataella kurtzmanii, Komagataella pastoris, Komagataella phaffii, Komagataella populi, Komagataella pseudopastoris and Komagataella ulmi by divergence in gene sequences for D1/D2 LSU rRNA, ITS1-5.8S-ITS2, RNA polymerase subunit I and translation elongation factor-1α. Komagataella mondaviorum sp. nov. is registered in MycoBank under MB 821789.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29388077</PMID><DateCompleted><Year>2018</Year><Month>10</Month><Day>03</Day></DateCompleted><DateRevised><Year>2018</Year><Month>10</Month><Day>04</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1572-9699</ISSN><JournalIssue CitedMedium="Internet"><Volume>111</Volume><Issue>7</Issue><PubDate><Year>2018</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Antonie van Leeuwenhoek</Title><ISOAbbreviation>Antonie Van Leeuwenhoek</ISOAbbreviation></Journal><ArticleTitle>Description of Komagataella mondaviorum sp. nov., a new sibling species of Komagataella (Pichia) pastoris.</ArticleTitle><Pagination><MedlinePgn>1197-1207</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s10482-018-1028-6</ELocationID><Abstract><AbstractText>Five methylotrophic strains (UCDFST 71-1024<sup>T</sup>, UCDFST 54-11.16, UCDFST 54-11.141, UCDFST 68-967.1 and UCDFST 74-1030) from the Phaff Yeast Culture Collection (University of California Davis, USA) that were originally designated as Pichia pastoris were found to represent a novel Komagataella species. Strains of Komagataella mondaviorum sp. nov. UCDFST 71-1024<sup>T</sup>(type strain) = CBS 15017, UCDFST 54-11.16, UCDFST 54-11.141, UCDFST 68-967.1, and UCDFST 74-1030 were isolated in USA, respectively, from cottonwood tree Populus deltoides in 1971 (Davis, CA), slime flux of Quercus sp. in 1954 (CA), exudate of black oak Q. kelloggii in 1954 (Central Sierra Nevada. CA), dry frass from Salix sp. in 1968 (Soleduck Road, Olympic National Park, WA) and from flux of hackberry tree Celtis sp. in 1974 (CA). The new species was differentiated from Komagataella kurtzmanii, Komagataella pastoris, Komagataella phaffii, Komagataella populi, Komagataella pseudopastoris and Komagataella ulmi by divergence in gene sequences for D1/D2 LSU rRNA, ITS1-5.8S-ITS2, RNA polymerase subunit I and translation elongation factor-1α. Komagataella mondaviorum sp. nov. is registered in MycoBank under MB 821789.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Naumov</LastName><ForeName>Gennadi I</ForeName><Initials>GI</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-0026-1908</Identifier><AffiliationInfo><Affiliation>State Research Institute of Genetics and Selection of Industrial Microorganisms of National Research Centre "Kurchatov Institute", Moscow, 117545, Russia. gnaumov@yahoo.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Naumova</LastName><ForeName>Elena S</ForeName><Initials>ES</Initials><AffiliationInfo><Affiliation>State Research Institute of Genetics and Selection of Industrial Microorganisms of National Research Centre "Kurchatov Institute", Moscow, 117545, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Boundy-Mills</LastName><ForeName>Kyria L</ForeName><Initials>KL</Initials><AffiliationInfo><Affiliation>Phaff Yeast Culture Collection, Department of Food Science and Technology, University of California, Davis, 95616, CA, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>1349395</GrantID><Agency>National Science Foundation</Agency><Country></Country></Grant><Grant><GrantID>14-04-01262</GrantID><Agency>Russian Foundation for Basic Research</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>01</Month><Day>31</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Antonie Van Leeuwenhoek</MedlineTA><NlmUniqueID>0372625</NlmUniqueID><ISSNLinking>0003-6072</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance 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purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D029963" MajorTopicYN="N">Quercus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004718" MajorTopicYN="N">Saccharomycetales</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Methanol yeast</Keyword><Keyword MajorTopicYN="N">Multigenic analysis</Keyword><Keyword MajorTopicYN="N">New ascosporic yeast</Keyword><Keyword MajorTopicYN="N">Sibling species of Komagataella pastoris</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>10</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>01</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>2</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>10</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>2</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29388077</ArticleId><ArticleId 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Naumov</name></noRegion><name sortKey="Naumova, Elena S" sort="Naumova, Elena S" uniqKey="Naumova E" first="Elena S" last="Naumova">Elena S. Naumova</name></country><country name="États-Unis"><region name="Californie"><name sortKey="Boundy Mills, Kyria L" sort="Boundy Mills, Kyria L" uniqKey="Boundy Mills K" first="Kyria L" last="Boundy-Mills">Kyria L. Boundy-Mills</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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